Package: shinyExprPortal 1.2.1.9000

Rafael Henkin

shinyExprPortal: A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data

Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.

Authors:Rafael Henkin [cre, aut, cph]

shinyExprPortal_1.2.1.9000.tar.gz
shinyExprPortal_1.2.1.9000.zip(r-4.5)shinyExprPortal_1.2.1.9000.zip(r-4.4)shinyExprPortal_1.2.1.9000.zip(r-4.3)
shinyExprPortal_1.2.1.9000.tgz(r-4.4-any)shinyExprPortal_1.2.1.9000.tgz(r-4.3-any)
shinyExprPortal_1.2.1.9000.tar.gz(r-4.5-noble)shinyExprPortal_1.2.1.9000.tar.gz(r-4.4-noble)
shinyExprPortal_1.2.1.9000.tgz(r-4.4-emscripten)shinyExprPortal_1.2.1.9000.tgz(r-4.3-emscripten)
shinyExprPortal.pdf |shinyExprPortal.html
shinyExprPortal/json (API)
NEWS

# Install 'shinyExprPortal' in R:
install.packages('shinyExprPortal', repos = c('https://c4tb.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/c4tb/shinyexprportal/issues

On CRAN:

bioinformaticsdata-analysistranscriptomics

5.78 score 5 stars 8 scripts 275 downloads 6 exports 87 dependencies

Last updated 4 months agofrom:b8a1bf982d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-winOKNov 12 2024
R-4.5-linuxOKNov 12 2024
R-4.4-winOKNov 12 2024
R-4.4-macOKNov 12 2024
R-4.3-winOKNov 12 2024
R-4.3-macOKNov 12 2024

Exports:create_config_templatecreate_config_wizardcreate_examplecreate_module_templaterun_appshow_available_modules

Dependencies:assertthatbase64encbslibcachemclicolorspacecommonmarkconfigcpp11crayoncrosstalkdata.tabledigestdplyrDTevaluatefansifarverfastclusterfastmapfontawesomefsgenericsggdendroggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuviheatmaprisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrpromisespurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratreshape2Rfastrlangrmarkdownsassscalesshinyshinyhelpersourcetoolsstringistringrtibbletidyrtidyselecttinytexutf8vctrsvegawidgetviridisLitewithrxfunxtableyaml

Data Preparation Guide

Rendered fromdataprep.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2024-02-05
Started: 2022-09-20

Full Configuration Guide

Rendered fromconfig.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2024-02-05
Started: 2021-05-26

Portal UI and Code Customization

Rendered fromcustomization.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2024-02-05
Started: 2022-09-20

Quick Start Guide for shinyExprPortal

Rendered fromshinyExprPortal.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2024-02-13
Started: 2022-11-03