Package: shinyExprPortal 1.2.1.9000

Rafael Henkin

shinyExprPortal: A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data

Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.

Authors:Rafael Henkin [cre, aut, cph]

shinyExprPortal_1.2.1.9000.tar.gz
shinyExprPortal_1.2.1.9000.zip(r-4.7-any)shinyExprPortal_1.2.1.9000.zip(r-4.6-any)shinyExprPortal_1.2.1.9000.zip(r-4.5-any)
shinyExprPortal_1.2.1.9000.tgz(r-4.6-any)shinyExprPortal_1.2.1.9000.tgz(r-4.5-any)
shinyExprPortal_1.2.1.9000.tar.gz(r-4.7-any)shinyExprPortal_1.2.1.9000.tar.gz(r-4.6-any)
shinyExprPortal_1.2.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
shinyExprPortal/json (API)

# Install 'shinyExprPortal' in R:
install.packages('shinyExprPortal', repos = c('https://c4tb.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/c4tb/shinyexprportal/issues

Pkgdown/docs site:https://c4tb.github.io

On CRAN:

Conda:

bioinformaticsdata-analysistranscriptomics

5.04 score 5 stars 11 scripts 281 downloads 6 exports 81 dependencies

Last updated from:b8a1bf982d. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK144
source / vignettesOK197
linux-releaseOK151
macos-releaseOK193
macos-oldrelOK192
windows-develOK100
windows-releaseOK107
windows-oldrelOK131
wasm-releaseOK113

Exports:create_config_templatecreate_config_wizardcreate_examplecreate_module_templaterun_appshow_available_modules

Dependencies:assertthatbase64encbslibcachemclicommonmarkconfigcpp11crosstalkdata.tabledigestdplyrDTevaluatefarverfastclusterfastmapfontawesomefsgenericsggdendroggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuviheatmaprisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclelitedownmagrittrmarkdownMASSmemoisemimeotelpillarpkgconfigplyrpromisespurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppParallelreshape2RfastrlangrmarkdownS7sassscalesshinyshinyhelpersourcetoolsstringistringrtibbletidyrtidyselecttinytexutf8vctrsvegawidgetviridisLitewithrxfunxtableyamlzigg

Quick Start Guide for shinyExprPortal
Using the wizard | Creating a config template | Including new modules in the configuration | Deploying the portal remotely
Rendered fromshinyExprPortal.Rmdusingknitr::rmarkdown

Last update: 2024-02-13
Started: 2022-11-03

Data Preparation Guide
Validation checks | Additional files | Differential expression analysis results | Gene modules/lists | Asking for help
Rendered fromdataprep.Rmdusingknitr::rmarkdown

Last update: 2024-02-05
Started: 2022-09-20

Full Configuration Guide
Configuration file | Project details configuration | Data and global configurations | Modules | cohortOverview | compareTrajGroups | degDetails | degSummary | geneModulesHeatmap | geneProjectionOverlay | singleGeneCorr | singleMeasureCorr | multiMeasureCorr | Grouped modules | degModules | corrModules
Rendered fromconfig.Rmdusingknitr::rmarkdown

Last update: 2024-02-05
Started: 2021-05-26

Portal UI and Code Customization
Customizing the portal UI | Global customizations | Module customization | Using custom modules
Rendered fromcustomization.Rmdusingknitr::rmarkdown

Last update: 2024-02-05
Started: 2022-09-20