Package: shinyExprPortal 1.2.1.9000
shinyExprPortal: A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data
Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.
Authors:
shinyExprPortal_1.2.1.9000.tar.gz
shinyExprPortal_1.2.1.9000.zip(r-4.5)shinyExprPortal_1.2.1.9000.zip(r-4.4)shinyExprPortal_1.2.1.9000.zip(r-4.3)
shinyExprPortal_1.2.1.9000.tgz(r-4.4-any)shinyExprPortal_1.2.1.9000.tgz(r-4.3-any)
shinyExprPortal_1.2.1.9000.tar.gz(r-4.5-noble)shinyExprPortal_1.2.1.9000.tar.gz(r-4.4-noble)
shinyExprPortal_1.2.1.9000.tgz(r-4.4-emscripten)shinyExprPortal_1.2.1.9000.tgz(r-4.3-emscripten)
shinyExprPortal.pdf |shinyExprPortal.html✨
shinyExprPortal/json (API)
NEWS
# Install 'shinyExprPortal' in R: |
install.packages('shinyExprPortal', repos = c('https://c4tb.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/c4tb/shinyexprportal/issues
bioinformaticsdata-analysistranscriptomics
Last updated 4 months agofrom:b8a1bf982d. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 12 2024 |
R-4.5-win | OK | Nov 12 2024 |
R-4.5-linux | OK | Nov 12 2024 |
R-4.4-win | OK | Nov 12 2024 |
R-4.4-mac | OK | Nov 12 2024 |
R-4.3-win | OK | Nov 12 2024 |
R-4.3-mac | OK | Nov 12 2024 |
Exports:create_config_templatecreate_config_wizardcreate_examplecreate_module_templaterun_appshow_available_modules
Dependencies:assertthatbase64encbslibcachemclicolorspacecommonmarkconfigcpp11crayoncrosstalkdata.tabledigestdplyrDTevaluatefansifarverfastclusterfastmapfontawesomefsgenericsggdendroggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuviheatmaprisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrpromisespurrrqvalueR6rappdirsRColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratreshape2Rfastrlangrmarkdownsassscalesshinyshinyhelpersourcetoolsstringistringrtibbletidyrtidyselecttinytexutf8vctrsvegawidgetviridisLitewithrxfunxtableyaml
Data Preparation Guide
Rendered fromdataprep.Rmd
usingknitr::rmarkdown
on Nov 12 2024.Last update: 2024-02-05
Started: 2022-09-20
Full Configuration Guide
Rendered fromconfig.Rmd
usingknitr::rmarkdown
on Nov 12 2024.Last update: 2024-02-05
Started: 2021-05-26
Portal UI and Code Customization
Rendered fromcustomization.Rmd
usingknitr::rmarkdown
on Nov 12 2024.Last update: 2024-02-05
Started: 2022-09-20
Quick Start Guide for shinyExprPortal
Rendered fromshinyExprPortal.Rmd
usingknitr::rmarkdown
on Nov 12 2024.Last update: 2024-02-13
Started: 2022-11-03
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Create a bare-bones configuration file template | create_config_template |
Create configuration and app.R files | create_config_wizard |
Create example files | create_example |
Creates a module code template in current working directory | create_module_template |
Run the Shiny Application | run_app |
Print list of currently supported modules | show_available_modules |